daisybio / NEASE
A network-based approach for exon set enrichment
☆15Updated this week
Alternatives and similar repositories for NEASE:
Users that are interested in NEASE are comparing it to the libraries listed below
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆15Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆51Updated this week
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆24Updated last month
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 weeks ago
- ☆29Updated last week
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆18Updated 10 months ago
- ☆44Updated 5 months ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- ☆37Updated 4 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- ☆15Updated 8 months ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated 10 months ago
- Comprehensive and scalable differential splicing analyses☆14Updated 7 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 7 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- ☆6Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- Motif manipulation functions for R.☆26Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆25Updated 2 years ago
- ☆20Updated last year
- ☆33Updated 4 months ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year