Alternatives and similar repositories for NEASE

Users that are interested in NEASE are comparing it to the libraries listed below

• bernardo-de-almeida / motif-clustering
  Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
  ☆26Updated 2 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• ulelab / clipplotr
  A tool to facilitate comparative visualisation of CLIP data
  ☆15Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆35Updated 2 weeks ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• songlab-cal / scquint
  ☆17Updated last year
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• anders-biostat / MethSCAn
  Python package with CLI for the analysis of single cell methylation data.
  ☆13Updated 7 months ago
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆36Updated 10 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆19Updated last month
• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆17Updated 2 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 3 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆25Updated 11 months ago
• gagneurlab / absplice
  ☆39Updated 8 months ago
• UPSUTER / GEMLI
  ☆31Updated 4 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• hart-lab / bagel
  BAGEL software
  ☆27Updated last year
• StatBiomed / CamoTSS
  Detection and couting alternative TSS in single cells
  ☆14Updated last year
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• MD-Anderson-Bioinformatics / SpliceSeq
  A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.
  ☆11Updated 8 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆31Updated 3 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated last month
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 2 months ago
• gexijin / idepGolem
  ☆38Updated last week
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 10 months ago
• wenweixiong / MARVEL
  ☆49Updated 10 months ago