A network-based approach for exon set enrichment
☆15Jul 16, 2025Updated last year
Alternatives and similar repositories for NEASE
Users that are interested in NEASE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 3 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆10Dec 11, 2025Updated 10 months ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- ☆25Aug 1, 2022Updated 4 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆35Apr 3, 2026Updated 6 months ago
- a novel method for unsupervised patient stratification☆10Oct 21, 2026Updated last week
- ☆17Jul 19, 2024Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 6 months ago
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 7 years ago
- Interpretable splicing model☆22Jun 14, 2023Updated 3 years ago
- ☆17Sep 30, 2026Updated last month
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- ☆10Mar 28, 2022Updated 4 years ago
- CDSeq R Package☆21Jul 1, 2025Updated last year
- ☆21May 31, 2024Updated 2 years ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- ☆17Mar 2, 2019Updated 7 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆24Oct 17, 2026Updated last week
- Code associated with the paper 'Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65'☆12Jul 20, 2026Updated 3 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- ☆24Jun 7, 2024Updated 2 years ago
- ☆31Nov 28, 2024Updated last year
- This repository contains the source code for the tappAS application. See README for details.☆22Jun 23, 2026Updated 4 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆44Jun 17, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 8 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- An R meta-package for the analysis of Next Generation Sequencing data☆32Updated this week
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆15Jun 9, 2026Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago