songlab-cal / scquintLinks
☆17Updated last year
Alternatives and similar repositories for scquint
Users that are interested in scquint are comparing it to the libraries listed below
Sorting:
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 6 months ago
- binned motif enrichment analysis and visualisation☆41Updated this week
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆22Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆16Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- scover☆23Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆20Updated 3 years ago
- ☆49Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 2 weeks ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- ☆23Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last week
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆19Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- ☆12Updated 5 years ago