songlab-cal / scquint
☆16Updated 9 months ago
Alternatives and similar repositories for scquint:
Users that are interested in scquint are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- scover☆23Updated last year
- ☆19Updated 8 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 10 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆12Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last month
- ☆20Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆12Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated 8 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Vaeda method for computational doublet annotation☆16Updated 8 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆17Updated 4 years ago
- ☆30Updated last month
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 8 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆19Updated 3 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last week
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago