songlab-cal / scquintLinks
☆17Updated last year
Alternatives and similar repositories for scquint
Users that are interested in scquint are comparing it to the libraries listed below
Sorting:
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 5 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆22Updated last year
- ☆20Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- scover☆23Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- ☆49Updated 10 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- ☆28Updated 6 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Python package with CLI for the analysis of single cell methylation data.☆13Updated 7 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆16Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- ☆19Updated 4 years ago
- ☆12Updated 4 years ago