songlab-cal / scquintLinks
☆18Updated last year
Alternatives and similar repositories for scquint
Users that are interested in scquint are comparing it to the libraries listed below
Sorting:
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 10 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- scover☆24Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- ☆16Updated last year
- binned motif enrichment analysis and visualisation☆43Updated last month
- ☆23Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆18Updated 8 months ago
- A network-based approach for exon set enrichment☆15Updated 4 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- ☆34Updated 3 weeks ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- ☆23Updated 4 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Updated 3 years ago