songlab-cal / scquint
☆15Updated 8 months ago
Alternatives and similar repositories for scquint:
Users that are interested in scquint are comparing it to the libraries listed below
- ☆44Updated 5 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆30Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- scover☆22Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated last month
- ☆20Updated last year
- ☆12Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- ☆12Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆19Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- SCASA: Single cell transcript quantification tool☆20Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 weeks ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆18Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 9 months ago
- High-definition modeling of chromatin + transcriptomics data☆21Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated 2 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated 4 months ago
- Vaeda method for computational doublet annotation☆15Updated 6 months ago