olapuentesantana / easierLinks
R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
☆14Updated 5 months ago
Alternatives and similar repositories for easier
Users that are interested in easier are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- BulkSignalR☆19Updated 2 months ago
- ☆16Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆10Updated 4 months ago
- ☆12Updated last year
- ☆10Updated last week
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆13Updated 10 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated this week
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆15Updated last week
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆24Updated 11 months ago
- ☆17Updated 8 months ago
- ☆17Updated last year
- HTCA Analysis Tools☆5Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 8 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆9Updated 8 years ago
- Pseudotime Analysis for Bulk Data☆15Updated 10 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- Code used to process the data of the HBCA project☆27Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆14Updated 6 months ago
- ☆22Updated 2 years ago
- ☆23Updated 2 years ago