olapuentesantana / easier
R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
☆13Updated last month
Alternatives and similar repositories for easier:
Users that are interested in easier are comparing it to the libraries listed below
- ☆15Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated 6 months ago
- Pseudotime Analysis for Bulk Data☆14Updated 5 months ago
- BulkSignalR☆15Updated 8 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆17Updated 3 years ago
- Code used to process the data of the HBCA project☆22Updated 11 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆23Updated 7 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 2 months ago
- ☆11Updated 10 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆11Updated 2 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- ☆16Updated 2 years ago
- ☆22Updated last year
- ☆16Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- R tools for analysis and visualization of single-cell subclustering data☆15Updated 9 months ago
- ☆15Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆29Updated 7 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆54Updated 3 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆14Updated 2 weeks ago
- ☆54Updated 7 months ago
- ☆13Updated 7 months ago