olapuentesantana / easier
R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
☆13Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for easier
- ☆15Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆28Updated 5 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- ☆16Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- ☆22Updated last year
- Pseudotime Analysis for Bulk Data☆13Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆20Updated 5 months ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆18Updated 2 years ago
- ☆17Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆14Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆18Updated 8 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- Repository for codes for the HBCA paper☆35Updated last year
- ☆31Updated 8 months ago
- ☆12Updated last year
- ☆34Updated 2 years ago
- Code used to process the data of the HBCA project☆21Updated 9 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- ☆48Updated 4 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆12Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆14Updated 2 months ago