ConesaLab / acorde
Isoform co-usage networks from single-cell RNA-seq data
☆15Updated 11 months ago
Alternatives and similar repositories for acorde:
Users that are interested in acorde are comparing it to the libraries listed below
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated 3 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated 3 weeks ago
- ☆14Updated this week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 9 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆27Updated 2 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Single-cell RNA Processing Software☆11Updated 4 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆13Updated last year
- ☆23Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 10 months ago
- ☆20Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- ☆18Updated 7 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆45Updated 6 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- ☆16Updated 8 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆16Updated 11 months ago