Alternatives and similar repositories for acorde

Users that are interested in acorde are comparing it to the libraries listed below

• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆15Updated 2 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• Vivianstats / MAAPER
  Model-based analysis of APA using 3' end-linked reads
  ☆11Updated 4 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆30Updated 3 years ago
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• songlab-cal / scquint
  ☆18Updated last year
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 5 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆20Updated last year
• flemingtonlab / SpliceTools
  ☆17Updated last year
• qqwang-berkeley / JUM
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Updated 2 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆23Updated 2 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆44Updated last week
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• kundajelab / ataqc
  ☆17Updated 7 years ago
• jw156605 / SingleSplice
  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…
  ☆23Updated 9 years ago
• ijuric / MAPS
  ☆19Updated 2 years ago
• YosefLab / ImpulseDE2
  ☆42Updated 3 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆28Updated 2 years ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆22Updated 3 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago