A list of alternative splicing analysis resources
☆49Mar 26, 2025Updated 11 months ago
Alternatives and similar repositories for Alternative-Splicing-Tools
Users that are interested in Alternative-Splicing-Tools are comparing it to the libraries listed below
Sorting:
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 3 months ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 8 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆53Feb 11, 2026Updated last month
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 12, 2026Updated last week
- ☆292Mar 4, 2026Updated 2 weeks ago
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆55Jun 29, 2023Updated 2 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 7 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆90Jan 24, 2025Updated last year
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- ☆14Apr 26, 2023Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- ☆64Sep 19, 2025Updated 6 months ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆29Aug 20, 2024Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- ☆49Mar 19, 2023Updated 3 years ago
- alternative splicing analysis pipeline☆20Apr 9, 2021Updated 4 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆22Mar 30, 2024Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆293Nov 6, 2025Updated 4 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆85Jun 17, 2024Updated last year
- ☆25Oct 22, 2025Updated 5 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- R package for large-scale CNV analysis from RNA-seq☆19Dec 21, 2023Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- ☆13May 27, 2025Updated 9 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 10 months ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated last month
- Improving gene isoform quantification with miniQuant☆36Jan 13, 2026Updated 2 months ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- ☆18May 31, 2024Updated last year