Alternatives and similar repositories for spycone

Users that are interested in spycone are comparing it to the libraries listed below

• daisybio / NEASE
  A network-based approach for exon set enrichment
  ☆15Updated 3 weeks ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• songlab-cal / scquint
  ☆17Updated last year
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 5 months ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 4 years ago
• frankligy / SNAF
  Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…
  ☆47Updated 6 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆35Updated 3 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆27Updated 2 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆44Updated last month
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 5 months ago
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 7 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆51Updated 10 months ago
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆15Updated last year
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆33Updated last year
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆33Updated 10 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 2 years ago
• salzman-lab / SICILIAN
  ☆22Updated last year
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 10 months ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆60Updated 8 months ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 3 months ago
• TobiTekath / DTUrtle
  Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
  ☆20Updated last year
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆42Updated this week
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago