Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
☆11Dec 11, 2025Updated 10 months ago
Alternatives and similar repositories for spycone
Users that are interested in spycone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated last year
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 3 months ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- ☆21May 31, 2024Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆27Oct 5, 2026Updated last month
- ☆39Aug 6, 2026Updated 3 months ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 7 years ago
- DeepSAP repository for documentation and supplemental data☆11Jul 31, 2026Updated 3 months ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆35Apr 3, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- Interpretable splicing model☆22Jun 14, 2023Updated 3 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆24Oct 17, 2026Updated 2 weeks ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆20Oct 23, 2026Updated 2 weeks ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆12Apr 20, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 3 years ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 4 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated 2 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- ☆31Nov 28, 2024Updated last year
- Inton Trainer is designed for learning the intonation of oral speech.☆13Jun 27, 2026Updated 4 months ago