Snakemake pipeline for running MAJIQ
☆23Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for splicing
Users that are interested in splicing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 31, 2026Updated last month
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- ☆12Feb 19, 2021Updated 5 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- ☆21Aug 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆15Oct 28, 2025Updated 6 months ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆36Aug 14, 2023Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated last month
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 10 years ago
- ☆27Oct 22, 2025Updated 6 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Fast FASTQ sample demultiplexing in Rust.☆69Updated this week
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Transcription Factor Co-Occurrence using Market Basket analysis☆17Jul 7, 2025Updated 9 months ago
- ☆295Mar 4, 2026Updated 2 months ago
- ☆17Jul 19, 2024Updated last year
- ☆14May 12, 2023Updated 2 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- ☆23Jun 5, 2021Updated 4 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 3 months ago
- ☆16May 7, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 2 months ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆14Nov 5, 2025Updated 5 months ago
- ☆39Jul 3, 2025Updated 10 months ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 6 months ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- ☆13Nov 19, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pangolin is a deep-learning method for predicting splice site strengths.☆85Jun 17, 2024Updated last year
- ☆24Jul 29, 2025Updated 9 months ago
- Classic hello world script in Nextflow language☆24Feb 6, 2026Updated 2 months ago
- ☆20Nov 17, 2025Updated 5 months ago
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 5 months ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago