frattalab / splicing
Snakemake pipeline for running MAJIQ
☆19Updated last year
Alternatives and similar repositories for splicing:
Users that are interested in splicing are comparing it to the libraries listed below
- Merge fastq files split over lanes☆20Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 10 months ago
- ☆9Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- workshop website on readthedocs☆19Updated 2 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 5 months ago
- ☆27Updated 2 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- R package wrapping bedtools☆38Updated this week
- RNA editing tests☆16Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 2 months ago
- ☆23Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- a set of NGS pipelines☆24Updated this week
- SingleCell Nanopore sequencing data analysis☆55Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- RNAseq pipeline based on snakemake☆25Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- ☆21Updated 2 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Motif manipulation functions for R.☆28Updated 3 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 2 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆26Updated 4 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago