dakwok / SSNIPLinks
The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from cancer-specific splicing events (neojunctions). The code available in this repository are the neopeptide identifier stages: 1. Neojunction calling, 2. Neopeptide prediction, 3. n-mer presentation prediction
☆20Updated 7 months ago
Alternatives and similar repositories for SSNIP
Users that are interested in SSNIP are comparing it to the libraries listed below
Sorting:
- 🧬 Gene analysis toolkit based on R☆59Updated 10 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ☆15Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- ☆41Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Inference of TCR motifs☆32Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- documentation for trackViewer☆29Updated 6 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded