smehringer / SViperLinks
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
☆32Updated 3 years ago
Alternatives and similar repositories for SViper
Users that are interested in SViper are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆31Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆49Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆36Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆43Updated last year
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆79Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆81Updated 7 months ago
- SV calling for diploid assemblies☆29Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Detection and genotyping of structural variants☆19Updated 2 weeks ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- Structural variant caller☆55Updated 3 years ago
- ☆36Updated 3 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated 11 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago