Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
☆31Sep 19, 2022Updated 4 years ago
Alternatives and similar repositories for SViper
Users that are interested in SViper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆85Mar 3, 2025Updated last year
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 8 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆113Oct 25, 2021Updated 5 years ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆45May 8, 2024Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 6 months ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated 2 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison