smehringer / SViperLinks
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
☆32Updated 3 years ago
Alternatives and similar repositories for SViper
Users that are interested in SViper are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- ☆36Updated last year
- Variant annotation and merging pipeline☆39Updated 4 months ago
- ☆31Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆49Updated last year
- ☆43Updated last year
- ☆83Updated 8 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- SV calling for diploid assemblies☆29Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆78Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆44Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- ☆38Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆36Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- ☆31Updated 10 months ago
- ☆31Updated 6 months ago
- Detection and genotyping of structural variants☆19Updated last month