Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
☆32Sep 19, 2022Updated 3 years ago
Alternatives and similar repositories for SViper
Users that are interested in SViper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated 11 months ago
- ☆85Mar 3, 2025Updated last year
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Jasmine: SV Merging Across Samples☆253Dec 20, 2024Updated last year
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last month
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆44May 8, 2024Updated 2 years ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 8 months ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 9 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- GBWT-based handle graph☆34May 27, 2026Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆115Jun 8, 2026Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated 3 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set