smehringer / SViper
Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
☆32Updated 2 years ago
Alternatives and similar repositories for SViper:
Users that are interested in SViper are comparing it to the libraries listed below
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Variant annotation and merging pipeline☆31Updated last week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆79Updated 8 months ago
- Structural variant caller☆54Updated 3 years ago
- ☆31Updated 5 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- ☆33Updated 9 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated last month
- ☆48Updated 6 months ago
- ☆76Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆27Updated 5 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆31Updated 4 years ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆34Updated 6 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- SV calling for diploid assemblies☆23Updated 9 months ago
- SV genotyping with long reads☆40Updated last year
- A tool for evaluate long-read de novo assembly results☆42Updated 4 months ago
- ☆34Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago