A VCF comparison engine for structual variant benchmarking
☆24Sep 26, 2025Updated 11 months ago
Alternatives and similar repositories for hap-eval
Users that are interested in hap-eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command-line interface for Sentieon pipelines☆16Aug 22, 2026Updated last week
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jul 23, 2026Updated last month
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Model files for Sentieon variant callers☆17Jul 23, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for sniffing out the differences in vari-Ants☆50Aug 10, 2026Updated 2 weeks ago
- ☆24Jul 15, 2026Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Sep 27, 2023Updated 2 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆89Updated this week
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- A tool for somatic structural variant calling using long reads☆178Jun 8, 2026Updated 2 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆117Apr 9, 2025Updated last year
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- ☆11Dec 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Dec 6, 2023Updated 2 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- ☆32Jun 18, 2026Updated 2 months ago
- ☆45Jul 16, 2026Updated last month
- Complex structural variant visualization for HiFi sequencing data☆51Aug 6, 2026Updated 3 weeks ago
- ☆41Jan 14, 2026Updated 7 months ago
- ☆19Jul 15, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- A multiscale pangenome browser☆35Jul 18, 2026Updated last month
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆23Jul 1, 2026Updated last month
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year