Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]
☆18Mar 26, 2026Updated last month
Alternatives and similar repositories for trexplorer-catalog
Users that are interested in trexplorer-catalog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 5 months ago
- Short Tandem Repeat disease loci resource☆29Updated this week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 9 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆45Apr 15, 2026Updated 3 weeks ago
- ☆11Feb 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆22Nov 13, 2025Updated 5 months ago
- A repository for version control of consortium data model(s)☆17Apr 27, 2026Updated last week
- POSTRE: Prediction Of STRuctural variant Effects☆28Apr 24, 2026Updated 2 weeks ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 10 months ago
- ☆19Mar 14, 2022Updated 4 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- mtDNA Variant Caller☆35Dec 23, 2024Updated last year
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 2 weeks ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Genome browser hub for the T2T genomes and resources☆27Apr 7, 2026Updated last month
- ☆24Feb 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated 2 weeks ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Phased assembly variant caller☆139Dec 4, 2024Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- Targeted genotyper for complex polymorphic genes☆38Apr 28, 2026Updated last week
- General purpose utility related to GAF files☆29May 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for sniffing out the differences in vari-Ants☆41Apr 7, 2026Updated last month
- Resources for private and secure Machine Learning and Artificial Intelligence☆13Jun 13, 2022Updated 3 years ago
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆31Nov 25, 2024Updated last year
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago