broadinstitute / trexplorer-catalogView external linksLinks
Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]
☆17Jan 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for trexplorer-catalog
Users that are interested in trexplorer-catalog are comparing it to the libraries listed below
Sorting:
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆42Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- Genome browser hub for the T2T genomes and resources☆27Sep 26, 2025Updated 4 months ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- A pipeline creation tool using Snakemake☆12Updated this week
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- ☆13Apr 18, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- ☆11Feb 14, 2023Updated 3 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆29Nov 23, 2025Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- General purpose utility related to GAF files☆29Jan 27, 2026Updated 3 weeks ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Dec 24, 2025Updated last month
- Telomere-to-Telomere diploid Indian Genome☆14Updated this week
- Genome Assembly 102☆17Apr 23, 2025Updated 9 months ago
- A repository for version control of consortium data model(s)☆16Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆18Updated this week
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- A tool for sniffing out the differences in vari-Ants☆38Jan 28, 2026Updated 2 weeks ago
- ☆12Oct 13, 2021Updated 4 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Dec 30, 2025Updated last month
- ☆33Nov 6, 2022Updated 3 years ago