volkansevim / alpha-CENTAURI
A python package from Pacific Biosciences to analyze centromeric sequences
☆21Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for alpha-CENTAURI
- Alignment-based Scrubbing pipeline☆20Updated 8 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Convert HAL to VG☆21Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆31Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated 2 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- ☆17Updated last month
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Statistics and analysis for variation graphs☆31Updated this week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆30Updated 2 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆42Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- ☆39Updated this week
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago