volkansevim / alpha-CENTAURILinks
A python package from Pacific Biosciences to analyze centromeric sequences
☆21Updated 10 years ago
Alternatives and similar repositories for alpha-CENTAURI
Users that are interested in alpha-CENTAURI are comparing it to the libraries listed below
Sorting:
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆37Updated last week
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- ☆35Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- TGS scaffolding☆47Updated 4 years ago
- ☆46Updated 5 years ago