volkansevim / alpha-CENTAURILinks
A python package from Pacific Biosciences to analyze centromeric sequences
☆21Updated 10 years ago
Alternatives and similar repositories for alpha-CENTAURI
Users that are interested in alpha-CENTAURI are comparing it to the libraries listed below
Sorting:
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- GBWT-based handle graph☆31Updated this week
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆35Updated 5 years ago
- Convert HAL to VG☆23Updated last year
- Graph based multi genome aligner☆49Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆51Updated last year
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Updated 8 years ago