annaprotasio / TE_ManAnnotLinks
Accompanying repository for our publications on manual curation methods for Transposable Elements.
☆20Updated last year
Alternatives and similar repositories for TE_ManAnnot
Users that are interested in TE_ManAnnot are comparing it to the libraries listed below
Sorting:
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 8 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- ☆26Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- ☆9Updated 4 years ago
- ☆30Updated 5 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆40Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 5 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆21Updated 3 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆24Updated 8 years ago
- ☆20Updated 10 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- ☆32Updated 9 months ago
- ☆30Updated 3 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆9Updated 9 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week