Alternatives and similar repositories for TE_ManAnnot:

Users that are interested in TE_ManAnnot are comparing it to the libraries listed below

• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• ShiuLab / PseudogenePipeline
  ☆38Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 6 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆30Updated 4 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆28Updated last month
• baozg / phased-assembly-check
  ☆29Updated last month
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 6 months ago
• hsigeman / findZX
  ☆19Updated 2 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆30Updated last week
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• jkimlab / DESCHRAMBLER
  ☆21Updated 11 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• SexGenomicsToolkit / PSASS
  Pooled Sequencing Analysis for Sex Signal
  ☆11Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• i10labtitech / GINGER
  ☆27Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆12Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆17Updated last year
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆15Updated 5 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 5 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆39Updated last year
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 2 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 7 months ago