Alternatives and similar repositories for TE_ManAnnot

Users that are interested in TE_ManAnnot are comparing it to the libraries listed below

• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆50Updated 7 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated last year
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆48Updated 10 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 5 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 7 months ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆20Updated 4 months ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆33Updated 8 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆26Updated 5 years ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• vlothec / TRASH
  RepeatIdentifier
  ☆69Updated 6 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• harvardinformatics / degenotate
  ☆52Updated 3 months ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 4 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated last year
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆51Updated 2 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 10 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 9 months ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated last year