annaprotasio / TE_ManAnnotLinks
Accompanying repository for our publications on manual curation methods for Transposable Elements.
☆20Updated 11 months ago
Alternatives and similar repositories for TE_ManAnnot
Users that are interested in TE_ManAnnot are comparing it to the libraries listed below
Sorting:
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆9Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 10 months ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated 2 years ago
- ☆40Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- ☆25Updated 3 months ago
- ☆20Updated 9 months ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- ☆32Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- ☆29Updated 5 months ago
- HiCAT new project☆28Updated 2 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- ☆31Updated 9 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago