☆160Aug 11, 2026Updated 2 months ago
Alternatives and similar repositories for ANNEVO
Users that are interested in ANNEVO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Using Deep Learning to predict gene annotations☆308Updated this week
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- Tiberius is a deep learning gene finder.☆141Updated this week
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Apr 22, 2026Updated 5 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆287Aug 10, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated 2 weeks ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C, Omni-C).☆113Jul 23, 2026Updated 2 months ago
- ☆25Sep 22, 2026Updated 2 weeks ago
- BRAKER re-implemented with snakemake☆88Updated this week
- A organelle de novo genome assembly toolkit☆85Feb 22, 2025Updated last year
- ☆29May 12, 2026Updated 4 months ago
- ☆45Dec 11, 2025Updated 9 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆18Apr 26, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Jul 12, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆34Jul 13, 2026Updated 2 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- Successor of bwa-mem for short-read alignment☆352Oct 1, 2026Updated last week
- Mosaic Genome Assembler☆29Sep 14, 2026Updated 3 weeks ago
- Identification of conserved non-coding sequences in plants☆52Jun 9, 2026Updated 4 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- ☆33Sep 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- fork of the GPU genome aligner☆40Sep 23, 2026Updated 2 weeks ago
- High-precision TE Annotator☆165Dec 4, 2025Updated 10 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- ☆124Sep 29, 2026Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 3 months ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆211Sep 28, 2026Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated last month
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 3 months ago
- TR annotation tool VAMPIRE☆18Sep 2, 2026Updated last month
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago