unavailable-2374 / Pan_TELinks
PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
☆21Updated last week
Alternatives and similar repositories for Pan_TE
Users that are interested in Pan_TE are comparing it to the libraries listed below
Sorting:
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Genome Annotation Pipeline☆39Updated last year
- ☆40Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- ☆21Updated last year
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆38Updated 3 months ago
- HiCAT new project☆29Updated 5 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- a Semi-automated pipeline for assembling T2T genome☆24Updated last week
- A genome assembly assessment pipeline.☆37Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 4 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated this week
- ☆32Updated 7 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆32Updated last month
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆45Updated 2 years ago
- ☆39Updated 11 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 4 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- An efficient assembly tool for plant mitochondrial genome☆64Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆13Updated 5 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated last year