unavailable-2374 / Pan_TEView external linksLinks
PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
☆24Jan 16, 2026Updated last month
Alternatives and similar repositories for Pan_TE
Users that are interested in Pan_TE are comparing it to the libraries listed below
Sorting:
- ☆15Feb 1, 2023Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 2 years ago
- ☆13Sep 11, 2025Updated 5 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- ☆14May 22, 2025Updated 8 months ago
- A parallel wrapper for LTR_FINDER☆55Mar 23, 2025Updated 10 months ago
- Mutual nearest neighbor graphs for population structure inference and visualization☆18Dec 4, 2025Updated 2 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆45Sep 22, 2025Updated 4 months ago
- ☆69Jan 15, 2026Updated last month
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆66Oct 23, 2025Updated 3 months ago
- ☆14Jul 27, 2019Updated 6 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 3 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 7 months ago
- ☆15Aug 6, 2018Updated 7 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated 7 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated last year
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- A local version of SAI, the automated stomata measuring tool☆24May 30, 2024Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Dec 15, 2025Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 9 months ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Complete assemblies of non-human primate genomes☆56May 20, 2025Updated 8 months ago
- A tool for evaluate long-read de novo assembly results☆48Aug 28, 2024Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago