xin-huang / sstarLinks
Detecting Archaic Introgression from Population Genetic Data with S*
☆10Updated last week
Alternatives and similar repositories for sstar
Users that are interested in sstar are comparing it to the libraries listed below
Sorting:
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- ☆14Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- ☆12Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- ☆12Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Updated 7 months ago
- Programs for performing various population genetic analyses☆11Updated 11 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated last month
- ☆13Updated 2 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 2 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated 5 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 4 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Updated 5 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Deleterious mutation prediction pipeline☆13Updated 10 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- ☆11Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 8 months ago
- Merging assemblies by using adjacency algebraic model and classification☆22Updated 2 years ago
- ☆15Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 2 weeks ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆16Updated last month
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year