Baohua-Chen / GFFxView external linksLinks
A Rust-Based suite of utilities for ultra-fast genomic feature extraction
☆41Dec 18, 2025Updated last month
Alternatives and similar repositories for GFFx
Users that are interested in GFFx are comparing it to the libraries listed below
Sorting:
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 4 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Simplifies parallel processing of DNA sequencing reads☆10Feb 3, 2026Updated 2 weeks ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆17Aug 12, 2025Updated 6 months ago
- Tool for exploring sequence alignment algorithms☆13Aug 30, 2024Updated last year
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 3 months ago
- ☆69Jan 15, 2026Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated 2 weeks ago
- implicit pangenome graph☆88Feb 9, 2026Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆113Updated this week
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- ☆19Feb 15, 2025Updated last year
- Fast interval intersection library☆44Aug 20, 2025Updated 5 months ago
- UMAP (Uniform Manifold Approximation and Projection) in Rust☆19Dec 28, 2025Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 4 months ago
- ☆39Feb 22, 2023Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last week
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆45Updated this week
- Phylogenetic orthology inference for comparative genomics☆96Jan 30, 2026Updated 2 weeks ago
- A tool for simulating random mutations in any genome☆43Feb 7, 2024Updated 2 years ago
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆20Jul 1, 2025Updated 7 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Dec 3, 2025Updated 2 months ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Sep 13, 2025Updated 5 months ago
- Minimal Example of the Rust extendr Crate☆21Jul 7, 2023Updated 2 years ago
- ☆15Aug 14, 2020Updated 5 years ago
- A very fast interval tree data structure☆130Feb 3, 2025Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆85Feb 7, 2026Updated last week