A Rust-Based suite of utilities for ultra-fast genomic feature extraction
☆42Dec 18, 2025Updated 4 months ago
Alternatives and similar repositories for GFFx
Users that are interested in GFFx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 8 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- Phylogenetic orthology inference for comparative genomics☆119Apr 2, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Mar 12, 2026Updated last month
- Efficient merging of structural variants from multiple SV callers and samples☆36Mar 27, 2026Updated 3 weeks ago
- ☆39Feb 22, 2023Updated 3 years ago
- Phased structural variant discovery in pangenomes☆41Apr 3, 2026Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆126Mar 20, 2026Updated 3 weeks ago
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆38Dec 17, 2025Updated 4 months ago
- ☆18Jan 14, 2026Updated 3 months ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- ☆20Mar 13, 2026Updated last month
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆49Feb 10, 2026Updated 2 months ago
- expressions on VCFs☆91Mar 17, 2026Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Mar 20, 2026Updated 3 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆21Updated this week
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated last week
- ☆110Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- Hosted version of cellxgene☆22Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆41Feb 15, 2025Updated last year
- Haplotype-aware assembly of complex regions and small genomes☆15Nov 21, 2025Updated 4 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆45Nov 1, 2025Updated 5 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 months ago
- Draw a dot plot from a paf alignment☆42Sep 18, 2025Updated 7 months ago
- implicit pangenome graph☆100Updated this week
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 8 months ago
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- A program for the analysis of single cell nanopore long read data☆20Jul 1, 2025Updated 9 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆47Feb 3, 2026Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated 2 months ago