A Rust-Based suite of utilities for ultra-fast genomic feature extraction
☆44Dec 18, 2025Updated 7 months ago
Alternatives and similar repositories for GFFx
Users that are interested in GFFx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- An extensible and performant aligner and read mapper☆99Updated this week
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- Rust-based sra-tools☆71Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Distance-based Phylogenetic Placer☆22Jul 13, 2026Updated 2 weeks ago
- Pangenome Mutation-Annotated Networks☆45Jul 14, 2026Updated 2 weeks ago
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 3 weeks ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Jul 20, 2026Updated last week
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Creating alignment plots from bam files☆132Updated this week
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆18Feb 25, 2026Updated 5 months ago
- ☆27Jun 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- tandemtwister: Tandem repeat genotyping tool☆19Feb 1, 2026Updated 5 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- ☆21Feb 15, 2025Updated last year
- fastVEP: High-performance Variant Effect Predictor in Rust☆113Updated this week
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 6 months ago
- plane sweep filtering genome alignments☆24Updated this week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Jul 20, 2026Updated last week
- ☆39Feb 22, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- ☆12Jun 7, 2024Updated 2 years ago
- ☆19Jul 12, 2026Updated 2 weeks ago
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ultra-rapid detection of viral variants directly from sequencing data☆46Updated this week
- ☆29Jun 1, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 3 weeks ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last month
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago