A visualization tool for studying chromosomal rearrangements through interactive synteny block analysis and chromosome breakpoint mapping.
β11Apr 16, 2026Updated this week
Alternatives and similar repositories for CHITRA
Users that are interested in CHITRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GSFetch is a powerful shell script designed to facilitate the batch downloading of genomic data using ncbi-datasetsβ10Jan 15, 2026Updated 3 months ago
- π Building a Streamlit boilerplate with Streamlit, SQLite DB, and REST API.β25Mar 6, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signalsβ10May 17, 2024Updated last year
- β13Nov 15, 2017Updated 8 years ago
- Gene Family Annotation Workflowβ12Mar 26, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Annotate Olfactory receptor CDS from genomeβ11Apr 29, 2023Updated 2 years ago
- The complete sequence of a Chinese individualβ12Oct 8, 2024Updated last year
- Tree reconstruction of ancestry using incomplete lineage sortingβ11Jan 9, 2026Updated 3 months ago
- Renames headers in FASTA fileβ13Jun 28, 2017Updated 8 years ago
- An R package to perform systematic quality checks on comparative genomics analysesβ12Mar 5, 2026Updated last month
- Estimating gene family turnover rates by likelihood-based methodsβ12Aug 17, 2020Updated 5 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on cβ¦β10Jun 9, 2022Updated 3 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkitβ11Jan 17, 2020Updated 6 years ago
- Calculate the dn/ds (also pn and ps) value of cdsβ14Jul 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Figures for the CHM13 T2T SD paper.β11Sep 12, 2021Updated 4 years ago
- De-novo Assembly Structural Variant Callerβ13Sep 15, 2016Updated 9 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromosoβ¦β15Aug 7, 2023Updated 2 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADsβ11Dec 21, 2019Updated 6 years ago
- Newick tree processingβ13Mar 25, 2026Updated 3 weeks ago
- Code for TAD_SV projectβ11Mar 16, 2022Updated 4 years ago
- Data visualization with Rβ12Dec 12, 2020Updated 5 years ago
- bisulfite sequencing pipeline from fastq to methylation reportsβ13Apr 10, 2026Updated last week
- β12Feb 16, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Some useful gadgetsβ12Mar 14, 2022Updated 4 years ago
- BioCarta pathway imagesβ11Jan 30, 2026Updated 2 months ago
- β11Sep 11, 2020Updated 5 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate speciesβ11May 16, 2021Updated 4 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analysesβ15Mar 18, 2022Updated 4 years ago
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomicsβ13Oct 1, 2024Updated last year
- tool for dating gene age by micro- and macro-synteny with high speed and accuracyβ15Jan 3, 2026Updated 3 months ago
- A Swiss-Army-Knife for Bioinformaticiansβ15Mar 20, 2026Updated last month
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.β13Mar 5, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomesβ12Aug 31, 2018Updated 7 years ago
- β13Nov 13, 2018Updated 7 years ago
- β13Apr 7, 2023Updated 3 years ago
- Killifish genomics scriptsβ12Feb 19, 2021Updated 5 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequenceβ26Updated this week
- β11Jul 4, 2022Updated 3 years ago
- Study of TE evolution in a population of genomesβ10Dec 11, 2023Updated 2 years ago