hillerlab / GenomeAlignmentTools
Tools for improving the sensitivity and specificity of genome alignments
☆57Updated last year
Alternatives and similar repositories for GenomeAlignmentTools
Users that are interested in GenomeAlignmentTools are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 2 years ago
- ☆43Updated 8 years ago
- A program to call variants from genome alignment☆80Updated 2 weeks ago
- TGS scaffolding☆46Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last month
- A tool for evaluate long-read de novo assembly results☆46Updated 8 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 7 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆39Updated 4 years ago
- ☆76Updated 4 years ago
- finshingTool☆55Updated 8 years ago
- ☆40Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 8 months ago
- A tool for evaluating long-read de novo assembly results☆35Updated 8 months ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 2 months ago
- A organelle de novo genome assembly toolkit☆59Updated 2 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆60Updated 4 months ago
- ☆77Updated 5 years ago