Tools for improving the sensitivity and specificity of genome alignments
☆58Mar 12, 2026Updated 7 months ago
Alternatives and similar repositories for GenomeAlignmentTools
Users that are interested in GenomeAlignmentTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 7 months ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Portable solution to generate genome alignment chains using lastz☆74Updated this week
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- ☆29Jul 18, 2026Updated 3 months ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- A integrated pipeline for estimating Convergent accelerated evolutionary conserved non-coding elements☆21Aug 29, 2026Updated 2 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆39May 11, 2026Updated 5 months ago
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated last week
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆71Sep 17, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- ☆83Jun 2, 2023Updated 3 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 3 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆254Sep 29, 2026Updated last month
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆37Oct 21, 2026Updated last week
- ☆28Aug 14, 2026Updated 2 months ago
- ☆11Oct 23, 2019Updated 7 years ago
- ☆13Apr 7, 2023Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated last year
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 9 months ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- Hierarchical Alignment Format☆189Oct 19, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 5 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- Scripts used in the annotation of B10K genomes☆17Jun 1, 2020Updated 6 years ago
- Find and visualize rearrangements in DNA sequences☆56Jun 3, 2026Updated 4 months ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆12Jan 17, 2020Updated 6 years ago
- Assembly statistic visualisation☆96Dec 22, 2023Updated 2 years ago