hillerlab / GenomeAlignmentToolsLinks
Tools for improving the sensitivity and specificity of genome alignments
☆58Updated last year
Alternatives and similar repositories for GenomeAlignmentTools
Users that are interested in GenomeAlignmentTools are comparing it to the libraries listed below
Sorting:
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- ☆44Updated 8 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- ☆77Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- TGS scaffolding☆46Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆58Updated 3 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆25Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- ☆42Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated 7 months ago
- test repository☆29Updated 2 years ago
- ☆40Updated 2 years ago
- ☆77Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆52Updated 2 months ago
- Simple pileup-based variant caller☆92Updated 4 months ago