Alternatives and similar repositories for GGisy

Users that are interested in GGisy are comparing it to the libraries listed below

• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆20Updated 5 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 7 years ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆23Updated 5 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆50Updated last month
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 4 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 10 months ago
• PatrickKueck / FASconCAT-G
  FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…
  ☆34Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆26Updated 6 months ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 6 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆35Updated 3 weeks ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆22Updated 5 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 4 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• nf-core / genomeassembler
  Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
  ☆30Updated 3 weeks ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• mokuno3430 / blastn2dotplots
  blastn2dotplots: multiple dot-plot visualizer
  ☆20Updated 2 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆15Updated 3 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 10 months ago
• hillerlab / ForwardGenomics
  Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
  ☆24Updated 3 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆39Updated 2 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆31Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago