Sanrrone / GGisy
Genome-Genome circle synteny
☆25Updated last year
Alternatives and similar repositories for GGisy
Users that are interested in GGisy are comparing it to the libraries listed below
Sorting:
- Automatic evaluation of HGTs☆28Updated 3 months ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 4 months ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 5 months ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- This is the standalone version of the EviAnn pipeline☆34Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ContScout sequence contamination filter tool☆20Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Quality control plotting for long reads☆10Updated 11 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 11 months ago
- ☆32Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- ☆26Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Updated 7 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago