Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
☆22Mar 25, 2022Updated 4 years ago
Alternatives and similar repositories for GetTransTool
Users that are interested in GetTransTool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- extract gene TSS site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- Extract gene length based on featureCount calculation gene nonredundant exon length method.☆20Feb 14, 2022Updated 4 years ago
- An R package to visualize bigwigs.☆31Jul 5, 2022Updated 4 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆25Sep 5, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆61Mar 14, 2024Updated 2 years ago
- An elegant package to visualize gene structures☆84Apr 8, 2023Updated 3 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated last year
- ☆11Oct 23, 2024Updated 2 years ago
- An annotation package for ggplot plot☆120Nov 17, 2025Updated 11 months ago
- ☆28Dec 15, 2025Updated 10 months ago
- ☆10Jan 15, 2020Updated 6 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆79Sep 29, 2026Updated last month
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- ☆30Jul 16, 2022Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- ☆14Jul 13, 2020Updated 6 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Profile and Heatmap Visualization by Using ggplot2 and grid☆13Nov 21, 2023Updated 2 years ago
- ☆23Jan 29, 2024Updated 2 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 5 months ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated 3 months ago
- A rapid and low-memory multiple-genome aligner for closely related genomes☆25Sep 3, 2025Updated last year
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated last month
- ☆23Jul 20, 2026Updated 3 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BAMMtools is an R package for analysis of BAMM results☆11Dec 19, 2023Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆107Oct 13, 2026Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆38Oct 26, 2026Updated last week
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago
- ☆45Dec 11, 2025Updated 10 months ago