junjunlab / GetTransTool
Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
☆20Updated 2 years ago
Alternatives and similar repositories for GetTransTool:
Users that are interested in GetTransTool are comparing it to the libraries listed below
- A comprehensive pipeline for RNAseq data analysis☆22Updated 4 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 7 months ago
- Genome haplotype assembly and assessment method☆11Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆17Updated 4 years ago
- ☆13Updated 4 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 weeks ago
- Sorting and subsampling phylogenomic datasets☆21Updated 11 months ago
- ☆15Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- A tool for performing collinearity-incorporating homology inference☆28Updated last year
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆16Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated this week
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆24Updated 2 years ago
- an efficient Hi-C data processing pipeline☆15Updated 9 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 8 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆24Updated 2 weeks ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆15Updated last month
- ☆21Updated 5 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆28Updated this week
- A collection of tools for Genome Assembly analysis☆18Updated 7 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆34Updated 2 weeks ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago