Alternatives and similar repositories for Widespread-linked-selection

Users that are interested in Widespread-linked-selection are comparing it to the libraries listed below

• nbedelman / DiscovarCompGenomics
  ☆12Updated 6 years ago
• jingwanglab / Populus_superpangenome
  Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …
  ☆16Updated last year
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 7 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆14Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• therkildsen-lab / lcwgs-simulation
  ☆17Updated 3 years ago
• wen-chen / naughty_monkey
  Some useful gadgets
  ☆10Updated 3 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• yongzhiyang2012 / genome_analysis
  ☆15Updated 5 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆28Updated 6 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆13Updated 5 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆38Updated last year
• SexGenomicsToolkit / PSASS
  Pooled Sequencing Analysis for Sex Signal
  ☆11Updated 4 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated this week
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 8 months ago
• marqueda / SFS-scripts
  A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files
  ☆21Updated 2 years ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 7 years ago
• grahamgower / genomatnn
  Predicts adaptive introgression using a CNN trained on genotype matrices.
  ☆17Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆41Updated last month
• wlz0726 / Population_Genomics_Scripts
  Scripts of population genomics analysis
  ☆36Updated 7 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆31Updated 4 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year