jingwanglab / Widespread-linked-selectionLinks
Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
☆11Updated 5 years ago
Alternatives and similar repositories for Widespread-linked-selection
Users that are interested in Widespread-linked-selection are comparing it to the libraries listed below
Sorting:
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆16Updated last year
- ☆12Updated 6 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- Some useful gadgets☆10Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆21Updated last year
- ☆40Updated 2 years ago
- ☆16Updated 3 years ago
- ☆25Updated 3 years ago
- ☆32Updated 6 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆12Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Updated last year
- ☆17Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 3 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated last week
- Genome Annotation Pipeline☆36Updated last year
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Updated 2 years ago
- ☆24Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- ☆27Updated 5 months ago