Alternatives and similar repositories for badirate

Users that are interested in badirate are comparing it to the libraries listed below

• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 10 months ago
• jsdoublel / DISCO
  Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…
  ☆10Updated last month
• XuewenWangUGA / GMATA
  Software GMATA for SSR mining, marker designing, genotyping, plot etc.
  ☆14Updated 11 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 4 months ago
• ChenHuaLab / Beta-PSMC
  ☆12Updated 5 years ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated 10 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 5 months ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• alguoo314 / JASPER
  This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
  ☆12Updated last year
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 months ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆13Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• jameslz / ncbi-kit
  Download NCBI assembly genomes with ftp. rsync, ascp
  ☆11Updated 2 years ago
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆23Updated last week
• nsmro / synphoni
  SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…
  ☆11Updated 2 years ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated 11 months ago