Estimating gene family turnover rates by likelihood-based methods
☆12Aug 17, 2020Updated 5 years ago
Alternatives and similar repositories for badirate
Users that are interested in badirate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 5 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15May 11, 2026Updated 2 weeks ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- Code repository for the Global Ant Genomics Alliance☆17Jun 16, 2025Updated 11 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- ☆25Feb 24, 2026Updated 3 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated last week
- ☆26Jan 26, 2026Updated 4 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- ☆75Apr 23, 2020Updated 6 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 4 months ago
- ☆20Jun 20, 2022Updated 3 years ago
- ☆13Sep 11, 2025Updated 8 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- Synteny Mapping and Analysis Program☆30May 8, 2026Updated 3 weeks ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package to infer and analyze synteny networks from protein sequences☆39Jul 23, 2025Updated 10 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated last week
- cgat-apps repository☆36Apr 9, 2025Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated 11 months ago
- HyPhy: Hypothesis testing using Phylogenies☆261May 19, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Oct 11, 2022Updated 3 years ago
- Genome Annotation Pipeline☆44Aug 20, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago