fgvieira / badirate
Estimating gene family turnover rates by likelihood-based methods
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for badirate
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 4 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 7 months ago
- Domain based annotation of transposable elements☆19Updated last month
- Genome alignment and synteny plots☆27Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 2 years ago
- ☆16Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆13Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- ☆12Updated 5 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆17Updated 4 years ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- Diploid genome assembly analysis tools☆13Updated 2 months ago
- ☆12Updated 3 years ago
- ContScout sequence contamination filter tool☆16Updated last month
- Robust identification of orthologous synteny with the Orthology Index☆11Updated 3 weeks ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- DarkHorse2 source code☆9Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆20Updated 8 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago