fgvieira / badirate
Estimating gene family turnover rates by likelihood-based methods
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for badirate
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 3 months ago
- Genome alignment and synteny plots☆27Updated last year
- Automatic evaluation of HGTs☆22Updated 2 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last month
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 6 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆13Updated 3 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Diploid genome assembly analysis tools☆13Updated last month
- ContScout sequence contamination filter tool☆15Updated 3 weeks ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆10Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 6 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated 7 months ago
- Yet another Hi-C scaffolding tool☆19Updated 3 weeks ago
- ☆16Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of…☆16Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆24Updated 7 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 2 months ago