BGI-Qingdao / stlfr2supernova_pipelineLinks
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
☆20Updated 2 years ago
Alternatives and similar repositories for stlfr2supernova_pipeline
Users that are interested in stlfr2supernova_pipeline are comparing it to the libraries listed below
Sorting:
- ☆42Updated 4 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 9 months ago
- ☆77Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 10 months ago
- A novel genome assembly pipeline based on deep learning☆62Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 weeks ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆47Updated last month
- Tools for improving the sensitivity and specificity of genome alignments☆57Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- ☆42Updated last year
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆30Updated 7 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆102Updated 4 years ago
- ☆44Updated 8 years ago
- Mapping pipeline for data generated using Arima-HiC☆79Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆42Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated 3 weeks ago
- Application of pan-genome for population☆108Updated 9 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆19Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Simple pileup-based variant caller☆91Updated 3 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆34Updated last month
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Neural network classification of TE☆92Updated 2 months ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Updated 9 months ago