BGI-Qingdao / stlfr2supernova_pipelineLinks
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
☆20Updated 2 years ago
Alternatives and similar repositories for stlfr2supernova_pipeline
Users that are interested in stlfr2supernova_pipeline are comparing it to the libraries listed below
Sorting:
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆76Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- test repository☆29Updated last year
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Updated 2 years ago
- ☆30Updated 9 months ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆18Updated last year
- ☆29Updated 5 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 7 months ago
- TGS scaffolding☆46Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆36Updated last week
- ☆42Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆80Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Detection and genotyping of structural variants☆18Updated last month
- ☆44Updated 8 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆32Updated 8 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆20Updated 8 years ago