BGI-Qingdao / stlfr2supernova_pipelineLinks
A pipeline to de novo assemble the stLFR reads using Supernova Assembler
☆20Updated 2 years ago
Alternatives and similar repositories for stlfr2supernova_pipeline
Users that are interested in stlfr2supernova_pipeline are comparing it to the libraries listed below
Sorting:
- ☆78Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Updated 2 years ago
- ☆47Updated 3 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A novel genome assembly pipeline based on deep learning☆66Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Useful bioinformatic scripts☆58Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆104Updated 4 years ago
- ☆36Updated last year
- Variant annotation and merging pipeline☆40Updated 4 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated last month
- ☆42Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Updated 2 years ago
- ☆45Updated 9 years ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- ☆44Updated last year
- ☆30Updated 4 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆75Updated 3 weeks ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆60Updated 3 years ago
- SRF: Satellite Repeat Finder☆99Updated last year
- Detection and genotyping of structural variants☆19Updated last month
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated 3 weeks ago