Alternatives and similar repositories for bin

Users that are interested in bin are comparing it to the libraries listed below

• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆39Updated this week
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆43Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆21Updated 3 weeks ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 7 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆47Updated 4 months ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• Argonum-Clever2 / mike
  ☆31Updated 6 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 6 months ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆48Updated 3 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated 11 months ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• INTABiotechMJ / MITE-Tracker
  MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes
  ☆20Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated last year
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆30Updated 9 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆27Updated last year
• simon19891216 / CentIER
  ☆38Updated 2 months ago
• hewm2008 / Reseqtools
  A Toolkit for analyzing next-generation DNA Re-Sequencing data
  ☆14Updated 3 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• baozg / phased-assembly-check
  ☆30Updated 8 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆48Updated last month
• xjtu-omics / HiCAT
  HiCAT new project
  ☆29Updated 4 months ago