Zhanmengtao / bin
scripts
☆15Updated 6 years ago
Alternatives and similar repositories for bin:
Users that are interested in bin are comparing it to the libraries listed below
- ☆24Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- ☆27Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- ☆39Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆9Updated 9 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- ☆30Updated 2 weeks ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 6 months ago
- Plant genome assembly and annotation pipeline using snakemake☆42Updated last year
- ☆22Updated last year
- ☆20Updated 7 months ago
- A tool for performing collinearity-incorporating homology inference☆29Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated 3 weeks ago
- ☆29Updated 7 months ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated last month
- ☆17Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆28Updated 2 months ago
- ☆24Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 7 months ago
- Some useful gadgets☆10Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year