Zhanmengtao / binLinks
scripts
☆18Updated 6 years ago
Alternatives and similar repositories for bin
Users that are interested in bin are comparing it to the libraries listed below
Sorting:
- ☆40Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated last week
- a Semi-automated pipeline for assembling T2T genome☆20Updated last week
- Centromics: visualing centromeres with multiple omics data☆24Updated 5 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆37Updated 2 months ago
- ☆25Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- ☆31Updated 5 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- Genome haplotype assembly and assessment method☆12Updated last year
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Genome Annotation Pipeline☆36Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- ☆20Updated 3 years ago
- ☆37Updated last month
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆25Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- HiCAT new project☆28Updated 3 months ago
- ☆15Updated 5 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆12Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year