wanyuac / readSimulatorLinks
Simulating paired-end short sequencing reads from circular and linear genomes
☆11Updated 4 years ago
Alternatives and similar repositories for readSimulator
Users that are interested in readSimulator are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Statistics and analysis for variation graphs☆40Updated 5 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆27Updated last month
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆83Updated last week
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆32Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 2 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- Automatic evaluation of HGTs☆29Updated 4 months ago