Fast pairwise transmission inference from single genome and/or metagenomic data
☆39Aug 21, 2026Updated last month
Alternatives and similar repositories for tracs
Users that are interested in tracs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 9, 2025Updated last year
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated last month
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Aug 8, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆127Updated this week
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆37Updated this week
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆66Jun 16, 2025Updated last year
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Recombination-free trees☆73Jul 24, 2026Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Sep 9, 2026Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆72Apr 10, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- transposable element typing pipeline☆20Updated this week
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆232May 9, 2026Updated 4 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 7 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆240Sep 17, 2026Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated 2 weeks ago
- ☆38Jan 12, 2026Updated 8 months ago
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 7 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆42Sep 16, 2026Updated last week
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 3 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 3 months ago
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅☆16Updated this week
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapid & standardized genome annotation using protein structural information☆80Sep 16, 2026Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated 2 weeks ago
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 6 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- Genome size estimation from long read overlaps☆97Sep 8, 2026Updated 2 weeks ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week