Fast pairwise transmission inference from single genome and/or metagenomic data
☆35Aug 1, 2025Updated 9 months ago
Alternatives and similar repositories for tracs
Users that are interested in tracs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30May 22, 2026Updated last week
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated 2 weeks ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jun 9, 2025Updated 11 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Recombination-free trees☆68Apr 26, 2026Updated last month
- Quickly get coverage statistics given reads and an assembly☆16May 13, 2024Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆232Apr 27, 2026Updated last month
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 10 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 3 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 3 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- ☆15Feb 10, 2025Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 11 months ago
- fast phage annotation program☆211Updated this week
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated last month
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- Interpretative standards for AMR genotypes☆30May 11, 2026Updated 2 weeks ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆35Oct 17, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆19Apr 24, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆16Nov 19, 2025Updated 6 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆19Mar 12, 2026Updated 2 months ago
- ☆38Jan 12, 2026Updated 4 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆108Mar 2, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆49Feb 20, 2026Updated 3 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 5 years ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 4 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- Fast sequence distance estimates☆28May 21, 2026Updated last week