Alternatives and similar repositories for treescan

Users that are interested in treescan are comparing it to the libraries listed below

• AMRverse / AMRrules
  Interpretative standards for AMR genotypes
  ☆26Updated this week
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆40Updated 3 weeks ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆28Updated 2 years ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆71Updated 2 years ago
• grubaughlab / DENV_pipeline
  ☆20Updated 9 months ago
• nalarbp / graphsnp
  GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser
  ☆12Updated 3 months ago
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆21Updated last month
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆28Updated 3 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆18Updated 2 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 4 months ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆20Updated 5 months ago
• CDCgov / aquascope
  ☆21Updated last month
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated last month
• dhelekal / CaveDive
  ☆18Updated last year
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 6 months ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆28Updated last year
• katholt / AMRrules
  Organism-specific interpretation of AMR genotypes
  ☆15Updated last year
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 3 months ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆21Updated 5 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆18Updated 3 years ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆23Updated 2 years ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 7 months ago
• emvolz-phylodynamics / mlesky
  ☆11Updated 11 months ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆24Updated 3 years ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆36Updated this week
• DOH-JDJ0303 / vaper
  Viral (meta)-genome assembly pipeline.
  ☆17Updated last week
• aweimann / traitar
  ☆22Updated 2 years ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆38Updated 2 months ago