Alternatives and similar repositories for unitig-caller

Users that are interested in unitig-caller are comparing it to the libraries listed below

• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆51Updated last month
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 2 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆23Updated 2 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 weeks ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated 2 weeks ago
• martinghunt / tna
  ☆16Updated 2 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆24Updated 6 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆33Updated 2 months ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 3 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated last month
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated this week
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆56Updated last month
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 4 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated 4 months ago
• rrwick / Are-reads-required
  ☆10Updated 3 weeks ago
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆22Updated 3 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆33Updated last year
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• imgag / plasmIDent
  ☆15Updated 11 months ago
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆18Updated 5 months ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆23Updated 5 months ago
• bioinf-mcb / MANIAC
  Computation of average nucleotide identity with the use of MMseqs2
  ☆13Updated 5 months ago
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆18Updated last month
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆25Updated last month
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last month
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago