bacpop / unitig-callerLinks
Methods to determine sequence element (unitig) presence/absence
☆20Updated 8 months ago
Alternatives and similar repositories for unitig-caller
Users that are interested in unitig-caller are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- ☆42Updated 3 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- Genome size estimation from long read overlaps☆59Updated last week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- ☆14Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 6 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- ☆10Updated 2 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 7 months ago
- Basecalling configuration prediction through FASTQ files☆21Updated 3 months ago
- Library of sketching functions used by PopPUNK☆31Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- ☆26Updated last year