Alternatives and similar repositories for unitig-caller

Users that are interested in unitig-caller are comparing it to the libraries listed below

• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆32Updated last month
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• rrwick / Are-reads-required
  ☆10Updated 6 months ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆28Updated 4 months ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆43Updated 2 years ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 9 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 7 months ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆34Updated last week
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 4 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆24Updated 2 years ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated 4 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated 2 weeks ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆39Updated 9 months ago
• bioinf-mcb / MANIAC
  Computation of average nucleotide identity with the use of MMseqs2
  ☆15Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 8 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated last week
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• nluhmann / BlastFrost
  ☆44Updated 4 years ago
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated 5 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 7 months ago
• Dmitry-Antipov / viralFlye
  viralFlye pipeline
  ☆18Updated last year
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated last week
• jmcbroome / autolin
  Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
  ☆17Updated 2 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 3 months ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆35Updated last month
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year