TreeSwift: Fast tree module for Python 3
☆87Nov 19, 2024Updated last year
Alternatives and similar repositories for TreeSwift
Users that are interested in TreeSwift are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight header-only C++ library for loading and traversing trees☆24Mar 9, 2025Updated last year
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- A minimalist tree plotting library using toyplot graphs☆192Mar 21, 2026Updated 3 weeks ago
- ☆22Mar 25, 2014Updated 12 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Mar 31, 2026Updated last week
- Quartet-based species tree and tree of blob estimation☆16Feb 10, 2026Updated 2 months ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- ☆21Mar 19, 2025Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated 3 weeks ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆233Mar 31, 2026Updated last week
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 6 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Mar 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆236Mar 27, 2026Updated 2 weeks ago
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- A tool for exploring large trees in the browser☆131Mar 31, 2026Updated last week
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Mar 22, 2026Updated 3 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Mar 31, 2026Updated last week
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- An R package for the Monte Carlo simulation of sequence evolution☆19May 6, 2014Updated 11 years ago
- Efficient phylogenetic clustering of viral sequences☆95Nov 19, 2025Updated 4 months ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆462Updated this week
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.☆144Apr 2, 2026Updated last week
- ☆42Apr 2, 2024Updated 2 years ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Apr 4, 2026Updated last week
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 8 months ago