TreeSwift: Fast tree module for Python 3
☆89Oct 26, 2026Updated this week
Alternatives and similar repositories for TreeSwift
Users that are interested in TreeSwift are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lightweight header-only C++ library for loading and traversing trees☆26Sep 5, 2026Updated last month
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- Estimating time trees from very large phylogenies☆27Sep 8, 2026Updated last month
- A tool for exploring large trees in the browser☆134Oct 7, 2026Updated 3 weeks ago
- A minimalist tree plotting library using toyplot graphs☆201Sep 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆257Updated this week
- ☆22Mar 25, 2014Updated 12 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Oct 24, 2026Updated last week
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆237Updated this week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- ☆23Mar 19, 2025Updated last year
- Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.☆91Aug 24, 2026Updated 2 months ago
- Workflow for RSV analyses on Nextstrain.org☆11Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆262Jun 25, 2026Updated 4 months ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Sep 27, 2026Updated last month
- Gotree: a set of command line tools and an API to manipulate phylogenetic trees.☆153Aug 20, 2026Updated 2 months ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆46Jul 2, 2026Updated 4 months ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆17May 14, 2021Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆73Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ancestral Sequence Reconstruction in Python☆15May 9, 2019Updated 7 years ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated last month
- Ultrafast Sample Placement on Existing Trees☆141Jun 1, 2026Updated 5 months ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Oct 15, 2026Updated 2 weeks ago
- Python version of PHLAWD☆23Oct 28, 2024Updated 2 years ago
- US Health and Human Services scientific funding visualizations☆17Oct 24, 2026Updated last week
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆127Apr 18, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆101Nov 19, 2025Updated 11 months ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Oct 5, 2026Updated 3 weeks ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 3 years ago