Alternatives and similar repositories for TreeSwift

Users that are interested in TreeSwift are comparing it to the libraries listed below

• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 3 years ago
• aaronmussig / PhyloDM
  Efficient calculation of phylogenetic distance matrices.
  ☆48Updated last year
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 7 months ago
• HadrienG / taxadb
  locally query the ncbi taxonomy
  ☆39Updated 2 years ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆27Updated last year
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆89Updated last week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆62Updated 2 weeks ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated 2 months ago
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 5 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆112Updated 2 months ago
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆51Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 4 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• spacegraphcats / spacegraphcats
  Indexing & querying large assembly graphs -- in space, no one can hear you miao!
  ☆118Updated this week
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆23Updated 6 years ago
• citiususc / veryfasttree
  Efficient phylogenetic tree inference for massive taxonomic datasets
  ☆130Updated 7 months ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆125Updated 5 months ago
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆117Updated last week
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆65Updated 4 months ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆37Updated 2 weeks ago
• NicolaDM / phastSim
  fast sequence evolution simulation for SARS-CoV-2 and similar
  ☆22Updated 6 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆53Updated 2 weeks ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆53Updated 3 weeks ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• taxoniq / taxoniq
  Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data
  ☆60Updated last year
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated last month
• anuradhawick / kmertools
  kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
  ☆41Updated this week