niemasd / TreeCluster
Efficient phylogenetic clustering of viral sequences
☆82Updated last year
Alternatives and similar repositories for TreeCluster
Users that are interested in TreeCluster are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- An R package designed for drawing gene arrow maps☆77Updated 3 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last month
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆48Updated 2 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆102Updated 3 weeks ago
- Precise host read removal☆94Updated 3 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆39Updated 2 years ago
- CLI tool to annotate genes with KOfam☆80Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- ☆70Updated last year
- Simple bacterial assembly and annotation pipeline☆74Updated this week
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆69Updated 2 weeks ago
- Bioinformatics program inStrain☆166Updated last week
- Split k-mer analysis – version 2☆85Updated 3 months ago
- PHANOTATE: a gene caller for phages.☆75Updated 5 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆93Updated 2 weeks ago
- ☆127Updated 8 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆89Updated 5 months ago
- orthology assignment using phylogenetic and network analyses☆45Updated 2 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆122Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆104Updated last year
- Best practices and workflow for genome annotation☆77Updated last month
- Massively parallel phylogenetic placement of genetic sequences☆83Updated 2 years ago
- A package to annotate protein sequences☆58Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 5 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated 2 weeks ago
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆16Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago