timmassingham / simNGSLinks
Simulate short-reads datasets using probabilistic models
☆11Updated 12 years ago
Alternatives and similar repositories for simNGS
Users that are interested in simNGS are comparing it to the libraries listed below
Sorting:
- Toolkit for manipulating FASTA and SAM files☆19Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Find Unique genomic Regions☆30Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Hitting associations with k-mers☆45Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 3 months ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- ☆11Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Multithreaded read analysis☆19Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 11 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆34Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Reference genome quality scores☆21Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago