timmassingham / simNGSLinks
Simulate short-reads datasets using probabilistic models
☆11Updated 12 years ago
Alternatives and similar repositories for simNGS
Users that are interested in simNGS are comparing it to the libraries listed below
Sorting:
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Multithreaded read analysis☆19Updated 2 months ago
- Hitting associations with k-mers☆44Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Master of Pores 2☆23Updated 10 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- ☆28Updated 2 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 4 months ago
- Variant call adjudication☆16Updated last year
- reference free variant assembly☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago