Simulate short-reads datasets using probabilistic models
☆11Jun 1, 2013Updated 12 years ago
Alternatives and similar repositories for simNGS
Users that are interested in simNGS are comparing it to the libraries listed below
Sorting:
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- An accurate base caller for Illumina non-patterned sequencing platforms☆14Mar 10, 2019Updated 6 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 9 years ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 10 months ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- A quality control tool for FASTQ files written in rust☆53Jun 14, 2025Updated 8 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆26Nov 16, 2016Updated 9 years ago
- Materials for a workshop introducing machine learning to biologists☆24Mar 20, 2025Updated 11 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 5 months ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- ☆24May 22, 2025Updated 9 months ago
- Rust implmentation of VCF parser☆26Oct 2, 2022Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- CRyPTIC data processing pipelines☆34Jul 18, 2024Updated last year
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- ☆10Oct 24, 2021Updated 4 years ago
- This is a game interface called the doudizhu by Qt,and I only imitated the interface simply.The object has thr function of random license…☆12Sep 6, 2018Updated 7 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆10Feb 10, 2024Updated 2 years ago
- my PhD thesis☆36Jul 10, 2019Updated 6 years ago
- Hodge podge random stuff☆10Jan 20, 2017Updated 9 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- ☄☄彗星密码本,基于Taro的微信小程序☆11Aug 18, 2021Updated 4 years ago