timmassingham / simNGSLinks
Simulate short-reads datasets using probabilistic models
☆11Updated 12 years ago
Alternatives and similar repositories for simNGS
Users that are interested in simNGS are comparing it to the libraries listed below
Sorting:
- Toolkit for manipulating FASTA and SAM files☆20Updated last year
- Find Unique genomic Regions☆30Updated last week
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- reference free variant assembly☆34Updated 2 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆27Updated 8 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Multithreaded read analysis☆19Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 weeks ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 5 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- Highly sensitive pathogen detection☆12Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago