Simulate short-reads datasets using probabilistic models
☆11Jun 1, 2013Updated 12 years ago
Alternatives and similar repositories for simNGS
Users that are interested in simNGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- An accurate base caller for Illumina non-patterned sequencing platforms☆14Mar 10, 2019Updated 7 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- BioPerl scripts and utilities☆11Sep 2, 2025Updated 8 months ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- AYB2 -- All Your Base version 2. A base caller for the Illumina platform☆17Aug 11, 2020Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Materials for a workshop introducing machine learning to biologists☆25Mar 20, 2025Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Bio::Phylo - Phyloinformatic analysis using Perl☆17Dec 11, 2025Updated 4 months ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- ☆31Oct 26, 2021Updated 4 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆10Oct 24, 2024Updated last year
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 3 months ago
- CRyPTIC data processing pipelines☆34Jul 18, 2024Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Tools for interactive grid creation and manipulation in the console☆14Jun 19, 2022Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Module for practical Python one-liners☆37Feb 18, 2024Updated 2 years ago
- ☆16Aug 14, 2024Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- ☆11May 10, 2025Updated 11 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Updated this week
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- ☆11Apr 26, 2021Updated 5 years ago