[ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.
☆19Jun 19, 2025Updated last year
Alternatives and similar repositories for GERM
Users that are interested in GERM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆133Jan 1, 2026Updated 7 months ago
- ☆29Dec 15, 2025Updated 8 months ago
- ☆13Apr 23, 2025Updated last year
- JanusDNA☆32Mar 19, 2026Updated 5 months ago
- [ICML 2024] BiSHop: Bi-Directional Cellular Learning for Tabular Data with Generalized Sparse Modern Hopfield Model☆12Mar 2, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 3 months ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆20Jul 27, 2026Updated last month
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆56Jun 5, 2026Updated 2 months ago
- ☆14Nov 29, 2022Updated 3 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- Official release of Genos models.☆27Jan 30, 2026Updated 7 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- ☆20Dec 20, 2025Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17May 22, 2025Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 5 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- ☆19Mar 31, 2026Updated 4 months ago
- ☆23Updated this week
- ☆23Sep 19, 2025Updated 11 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆155Updated this week
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆90Nov 1, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 4 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆808Apr 22, 2025Updated last year
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆41Apr 16, 2026Updated 4 months ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- The analysis of the 1KCP☆18Dec 3, 2025Updated 8 months ago
- The project of the downstream tasks based on LucaOne's Embedding.☆78Apr 28, 2026Updated 4 months ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆49Aug 23, 2025Updated last year
- A Genomic Foundation Model☆179Apr 16, 2026Updated 4 months ago
- Mosaic Genome Assembler☆30Aug 11, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Foundation Models for Genomics & Transcriptomics☆913Feb 24, 2026Updated 6 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆251Mar 18, 2026Updated 5 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated last month
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 9 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆34May 16, 2025Updated last year