[ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.
☆19Jun 19, 2025Updated last year
Alternatives and similar repositories for GERM
Users that are interested in GERM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆135Jan 1, 2026Updated 8 months ago
- ☆29Dec 15, 2025Updated 9 months ago
- ☆13Apr 23, 2025Updated last year
- JanusDNA☆33Mar 19, 2026Updated 6 months ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆56Sep 5, 2026Updated 2 weeks ago
- ☆14Nov 29, 2022Updated 3 years ago
- Methylation analysis pipeline for genome graph☆16May 25, 2025Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- The official implementation of GenomeOcean.☆151Aug 5, 2026Updated last month
- [NeurIPS 2023] On Sparse Modern Hopfield Model☆58Mar 26, 2024Updated 2 years ago
- Official release of Genos models.☆27Jan 30, 2026Updated 7 months ago
- Benchmarks for classification of genomic sequences☆183Aug 14, 2025Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A new module for Megatron-LM training to enhance motif memory in Genomic☆18Feb 2, 2026Updated 7 months ago
- ☆20Dec 20, 2025Updated 8 months ago
- ☆17May 22, 2025Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 6 months ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- ☆19Mar 31, 2026Updated 5 months ago
- ☆16Aug 3, 2018Updated 8 years ago
- ☆23Sep 7, 2026Updated last week
- ☆23Sep 19, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- HydraRNA is a full-length RNA language model.☆18Dec 15, 2025Updated 9 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆516Jan 1, 2026Updated 8 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆156Aug 26, 2026Updated 3 weeks ago
- A family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.☆92Updated this week
- Virus Identification☆29May 26, 2025Updated last year
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆377Updated this week
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆808Apr 22, 2025Updated last year
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆40Apr 16, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The analysis of the 1KCP☆17Dec 3, 2025Updated 9 months ago
- The project of the downstream tasks based on LucaOne's Embedding.☆78Apr 28, 2026Updated 4 months ago
- Mosaic Genome Assembler☆29Updated this week
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- A Genomic Foundation Model☆181Apr 16, 2026Updated 5 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆252Mar 18, 2026Updated 6 months ago
- Foundation Models for Genomics & Transcriptomics☆920Feb 24, 2026Updated 6 months ago