Alternatives and similar repositories for strainFlye

Users that are interested in strainFlye are comparing it to the libraries listed below

• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆10Updated 3 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• uio-bmi / pyvg
  Importing vg json graphs to Python data structures.
  ☆12Updated 5 years ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated last year
• refresh-bio / clusty
  ☆12Updated 6 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last week
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated last year
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated last week
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 3 years ago
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last week
• yuansliu / minirmd
  ☆13Updated 2 years ago
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated 4 months ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• bo1929 / krepp
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆16Updated this week
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 3 months ago
• daihang16 / nubeamdedup
  Removing PCR duplicates for sequencing reads.
  ☆14Updated 5 years ago
• qm2 / gpress
  This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.
  ☆12Updated 2 years ago
• c5shen / EMMA
  an ensemble usage of MAFFT-linsi --add on large datasets
  ☆13Updated last year
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 4 years ago
• ktan8 / nanopore_telomere_basecall
  ☆14Updated 2 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week