fedarko / strainFlye
Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
☆10Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for strainFlye
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated 11 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- ☆16Updated 6 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 5 years ago
- ☆15Updated last year
- Variant call adjudication☆16Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- ☆22Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 7 years ago
- Variant call verification☆15Updated last year
- Highly sensitive pathogen detection☆11Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆10Updated last week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆9Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- maze: match visualizer☆9Updated 3 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- Nanopore read de-multiplexer☆13Updated 4 years ago
- ☆15Updated 2 months ago
- De novo genome assembler.☆11Updated 6 years ago