smyth-lab / Nano-DMS-MaPLinks
Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices
☆9Updated last year
Alternatives and similar repositories for Nano-DMS-MaP
Users that are interested in Nano-DMS-MaP are comparing it to the libraries listed below
Sorting:
- Fast and flexible ORF finder☆73Updated 3 years ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆20Updated last week
- Associated code for EvoWeaver publication☆15Updated 2 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Public repository for ShapeMapper 2 releases☆37Updated 7 months ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆17Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆26Updated 2 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 8 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 3 months ago
- ☆66Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- ☆62Updated 3 weeks ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆46Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆72Updated 3 months ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆92Updated 2 years ago
- iCount, protein-RNA interaction analytics☆23Updated 3 years ago
- Generate robust DNA barcode sets☆31Updated last year
- Pair-End AssembeR☆32Updated 11 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆64Updated 2 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆23Updated 4 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆19Updated last year