Efficient and fast querying and parsing of GTDB's data
☆29Aug 21, 2025Updated 7 months ago
Alternatives and similar repositories for xgt
Users that are interested in xgt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- ☆10Jun 9, 2025Updated 10 months ago
- Genome size estimation from long read overlaps☆82Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and exact gap-affine partial order alignment☆61Mar 22, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated 2 weeks ago
- ☆30Updated this week
- Development repo for pyani-plus (the next iteration of pyani)☆30Apr 7, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- Overview of our data for microbial genomic benchmarking☆36Feb 5, 2026Updated 2 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 9, 2026Updated last week
- Bifrost graph gene caller.☆98Mar 29, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆38Oct 29, 2024Updated last year
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 7 months ago
- Plasmid analysis using rearrangement distances☆50Apr 8, 2026Updated last week
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Bioinformatics tool for Locus Visualisation☆164Mar 30, 2026Updated 2 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆43Mar 26, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- fast phage annotation program☆201Feb 1, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated last month
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Nail is an Alignment Inference tooL☆54Updated this week
- Fast sequence distance estimates☆28Mar 10, 2026Updated last month
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Mar 30, 2026Updated 2 weeks ago
- Logan Unitigs and Contigs☆187Apr 1, 2026Updated 2 weeks ago
- A Python package to update the MLST database for the mlst tool.☆20Mar 31, 2026Updated 2 weeks ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month