Ebedthan / xgtView external linksLinks
Efficient and fast querying and parsing of GTDB's data
☆29Aug 21, 2025Updated 5 months ago
Alternatives and similar repositories for xgt
Users that are interested in xgt are comparing it to the libraries listed below
Sorting:
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 5 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆24Jan 26, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Oct 29, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 5 months ago
- Overview of our data for microbial genomic benchmarking☆35Feb 5, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Nov 13, 2025Updated 3 months ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 3 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆41Feb 6, 2026Updated last week
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated 2 weeks ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ☆10Jun 9, 2025Updated 8 months ago
- Bioinformatics tool for Locus Visualisation☆159Jan 24, 2026Updated 2 weeks ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Just another minhash implementation.☆12Updated this week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 6 months ago
- Python language bindings for bwa☆12Nov 24, 2025Updated 2 months ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 3 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Feb 5, 2026Updated last week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Aug 29, 2025Updated 5 months ago
- fast phage annotation program☆193Feb 1, 2026Updated last week
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Aug 22, 2025Updated 5 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 2 months ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 weeks ago
- ☆14Jan 28, 2026Updated 2 weeks ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- Nail is an Alignment Inference tooL☆55Jan 28, 2026Updated 2 weeks ago
- Logan Unitigs and Contigs☆184Sep 14, 2025Updated 4 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago