Efficient and fast querying and parsing of GTDB's data
☆29May 21, 2026Updated this week
Alternatives and similar repositories for xgt
Users that are interested in xgt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 9 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 9 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- ☆10Jun 9, 2025Updated 11 months ago
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆252May 13, 2026Updated last week
- plane sweep filtering genome alignments☆24Updated this week
- ☆30Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- Overview of our data for microbial genomic benchmarking☆37Apr 22, 2026Updated last month
- Development repo for pyani-plus (the next iteration of pyani)☆33May 19, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆40May 13, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 9 months ago
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated last week
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 4 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆45Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated last month
- fast phage annotation program☆210Apr 21, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆166Mar 30, 2026Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 weeks ago
- Nail is an Alignment Inference tooL☆55May 14, 2026Updated last week
- Fast sequence distance estimates☆28Updated this week
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60May 19, 2026Updated last week
- Logan Unitigs and Contigs☆191Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago