CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic comparison. JSON · CSV · TSV · stdin · parallel pagination · no runtime dependencies.
☆31Aug 3, 2026Updated last week
Alternatives and similar repositories for xgt
Users that are interested in xgt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- Fast sequence distance estimates☆30Aug 3, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆10Jun 9, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 3 months ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated 2 weeks ago
- ☆20Jan 13, 2026Updated 7 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Overview of our data for microbial genomic benchmarking☆41Jun 19, 2026Updated last month
- Query sequence database by HMMs arranged in predefined synteny structure☆20Jun 23, 2026Updated last month
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- Genome size estimation from long read overlaps☆92Aug 4, 2026Updated last week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nail is an Alignment Inference tooL☆64Aug 1, 2026Updated 2 weeks ago
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 3 months ago
- Taxonomic Classification of Bacteria and Archaea Genomes☆19May 20, 2026Updated 2 months ago
- Efficient calculation of phylogenetic distance matrices.☆50Oct 8, 2024Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Python language bindings for bwa☆12Jul 19, 2026Updated 3 weeks ago
- De novo genome assembly for long reads using an overlap graph☆23Jul 3, 2026Updated last month
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 2 months ago
- An extensible and performant aligner and read mapper☆100Jul 27, 2026Updated 2 weeks ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Fast DNA search and [host] depletion using minimizers☆121Updated this week