Ebedthan / xgt
Efficient and fast querying and parsing of GTDB's data
β28Updated 2 weeks ago
Alternatives and similar repositories for xgt:
Users that are interested in xgt are comparing it to the libraries listed below
- Mandrake πΏ/π¨βπ¬π¦ β Fast visualisation of the population structure of pathogens using Stochastic Cluster Embeddingβ36Updated 3 weeks ago
- Fast, scalable, accurate and accessible Bayesian phylogeneticsβ33Updated last week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.β18Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.β27Updated 2 weeks ago
- Remove human reads from a sequencing runβ38Updated 5 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)β22Updated 8 months ago
- Nail is an Alignment Inference tooLβ45Updated 2 months ago
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β22Updated 4 months ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ37Updated 3 months ago
- Genome size estimation from long read overlapsβ51Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or binsβ13Updated last month
- software to identify primers that can distinguish genomesβ21Updated 2 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious originβ14Updated 6 months ago
- Resolving Species Level Classification Using Emuβ12Updated 9 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.β16Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.β50Updated 8 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ30Updated last week
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- A listing of software, tools and databases useful for virome analysisβ20Updated last week
- Manipulate and generate figures for trees in Newick formatβ21Updated 2 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS readsβ21Updated last year
- TAXnomic Profile Aggregation and STAndardisationβ38Updated 5 months ago
- Intra-species bacterial contamination detectionβ25Updated last month
- Fast and space-efficient taxonomic classification of long readsβ43Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)β27Updated 11 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.β56Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learningβ37Updated 3 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCAβ33Updated last week
- Recombination-free treesβ57Updated this week