NCBI-Hackathons / ViruSpy
A pipeline for viral identification from metagenomic samples
☆27Updated 7 years ago
Alternatives and similar repositories for ViruSpy:
Users that are interested in ViruSpy are comparing it to the libraries listed below
- ⛓ Correct misassemblies using linked AND long reads☆57Updated last year
- DEPRECATED: Use Cenote-Taker 3 instead☆14Updated last year
- ☆10Updated 2 months ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated last month
- VAPiD: Viral Annotation and Identification Pipeline☆51Updated 8 months ago
- Histosketching Using Little Kmers☆55Updated last year
- RNA-Seq Mutation Detection☆28Updated 3 years ago
- A tool to easily create informative genomic feature plots☆17Updated 2 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆44Updated last year
- pipeline for the analysis of small RNA data☆14Updated 5 years ago
- The Dazzler Data Base☆35Updated 11 months ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- A sparse k-mer graph based, memory-efficient genome assembler.☆10Updated 6 years ago
- ☆10Updated 7 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated 2 months ago
- QIIME 2 plugin supporting taxonomic classification☆19Updated last week
- Reconstruction and analysis of viral and host genomes at multi-organ level☆22Updated 4 months ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 9 years ago
- Set of tools for viral metagenomics.☆14Updated last week
- Specifications for PacBio® native file formats☆30Updated 3 months ago
- small RNA analysis from NGS data☆37Updated 5 months ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆18Updated 4 years ago
- Software, architecture, and data index design for the 2018/2019 Virus Discovery Project☆31Updated 4 years ago
- Fast & accurate alignment of barcoded short-reads☆33Updated last year