Alternatives and similar repositories for ViruSpy

Users that are interested in ViruSpy are comparing it to the libraries listed below

• NCBI-Hackathons / Virus_Detection_SRA
  ☆10Updated 8 years ago
• ncbi / sra-human-scrubber
  An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…
  ☆48Updated 3 months ago
• rcs333 / VAPiD
  VAPiD: Viral Annotation and Identification Pipeline
  ☆54Updated last year
• JohnUrban / poreminion
  Additional tools for analyzing Oxford Nanopore minION data
  ☆17Updated 10 years ago
• widdowquinn / find_differential_primers
  Code for design of diagnostic PCR primers, and metabarcoding markers.
  ☆63Updated 2 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆56Updated 5 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆68Updated 4 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• dib-lab / 2018-ncbi-lineages
  Extract lineage CSVs from NCBI for use with sourmash lca.
  ☆29Updated 2 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• bcgsc / tigmint
  ⛓ Correct misassemblies using linked AND long reads
  ☆63Updated 2 years ago
• CFSAN-Biostatistics / snp-pipeline
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆63Updated 2 years ago
• thegenemyers / DAZZ_DB
  The Dazzler Data Base
  ☆36Updated 9 months ago
• PathoScope / PathoScope
  Pathoscope: Species identification and strain attribution with unassembled sequencing data
  ☆59Updated 6 years ago
• Sung-Huan / ANNOgesic
  ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
  ☆32Updated last year
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆60Updated 2 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated last year
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆41Updated last month
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated 2 months ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• hopkinsmarinestation / Population-Genomics-via-RNAseq
  Guide to transcriptome assembly & analysis
  ☆21Updated 8 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆49Updated 4 years ago
• WGS-standards-and-analysis / datasets
  Benchmark datasets for WGS analysis
  ☆39Updated 6 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago