samuell / scicommanderLinks
Run shell commands in a scientifically reproducible and robust way
☆23Updated 3 weeks ago
Alternatives and similar repositories for scicommander
Users that are interested in scicommander are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆20Updated last year
- Fast sequencing data quality metrics☆31Updated 5 months ago
- Python3 module for running MUMmer and reading the output☆34Updated 10 months ago
- Modular job submitter for arbitrary pipelines or commands.☆24Updated 3 months ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆52Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- ☆46Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆44Updated 4 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Interactive phylogenetic tree viewer/editor☆49Updated 2 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- gia: Genomic Interval Arithmetic☆66Updated last year
- Tool for exploring sequence alignment algorithms☆13Updated last year
- Implementation of Krona to QIIME2☆16Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Snakemake workflow management system and CLI generation tool☆63Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week