tsenoner / protspaceLinks
ProtSpace is program that helps in visualizing and investigating our protein embedding space.
☆25Updated this week
Alternatives and similar repositories for protspace
Users that are interested in protspace are comparing it to the libraries listed below
Sorting:
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆56Updated 3 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 6 months ago
- Fast protein domain structure embedding+search tool☆21Updated last month
- A domain parser for Alphafold models☆38Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- ☆40Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 6 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- ColabFold protocol☆50Updated 8 months ago
- ☆49Updated 3 months ago
- ☆68Updated 8 months ago
- ☆68Updated 9 months ago
- A tool for protein and protein complex structure prediction.☆29Updated 2 weeks ago
- GTalign, high-performance protein structure alignment, superposition and search☆46Updated this week
- Fast indexing and search of discontinuous motifs in protein structures☆23Updated this week
- Biological prediction models made simple.☆44Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆44Updated 3 years ago
- DeepECtransformer☆26Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 6 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- ☆21Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆51Updated last month
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- ☆30Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 2 years ago
- Protein structure alignment and search algorithm☆62Updated this week