tsenoner / protspaceLinks
ProtSpace is program that helps in visualizing and investigating our protein embedding space.
☆45Updated last week
Alternatives and similar repositories for protspace
Users that are interested in protspace are comparing it to the libraries listed below
Sorting:
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆78Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- DeepECtransformer☆29Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- Fast protein structure searching or your money back☆118Updated last week
- MMseqs2 app to run on your workstation or servers☆102Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆206Updated 3 months ago
- snakemake pipeline for creating trees from sequence sets☆95Updated 2 months ago
- Genomic language model predicts protein co-regulation and function☆85Updated 10 months ago
- ☆77Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 3 weeks ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- ColabFold protocol☆56Updated last year
- ☆30Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Protein structure alignment and search algorithm☆77Updated last week
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 5 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Updated last year
- ☆47Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago