yueyujiang / DEPPLinks
☆18Updated 2 months ago
Alternatives and similar repositories for DEPP
Users that are interested in DEPP are comparing it to the libraries listed below
Sorting:
- distance based phylogenetic placement☆27Updated last year
- ☆43Updated last year
- Fast and accurate Phylogeny estimation with self-attention Networks☆36Updated last month
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆34Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Updated last year
- Evaluating Nanopore-based bacterial variant calling☆19Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 8 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated 2 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆29Updated this week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Gene-flank analysis tool☆27Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- ☆22Updated 11 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- ☆28Updated last year
- Bacterial GWAS analysis☆40Updated last week
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 4 months ago
- ☆32Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 11 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆41Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated 2 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated last month
- Prophage Activity Estimator☆26Updated last year