OLF-Bioinformatics / VariantDetectiveLinks
Identify short variants and structural variants from raw sequencing data or genomic sequences
☆27Updated last year
Alternatives and similar repositories for VariantDetective
Users that are interested in VariantDetective are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆40Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Eukaryotic genome annotation software.☆18Updated this week
- whole genome MLST analysis☆43Updated 2 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- Ancient microbiome snakemake workflow☆25Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- Discover and annotate the virome☆43Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- ☆52Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated 2 months ago