OLF-Bioinformatics / VariantDetective
Identify short variants and structural variants from raw sequencing data or genomic sequences
☆24Updated 11 months ago
Alternatives and similar repositories for VariantDetective:
Users that are interested in VariantDetective are comparing it to the libraries listed below
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last month
- Bacterial GWAS analysis☆36Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- Split Kmer Analysis☆62Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- whole genome MLST analysis☆40Updated 9 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Recombination-free trees☆57Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated last month
- IslandPath standalone software☆31Updated last year
- Gene-flank analysis tool☆27Updated 2 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆25Updated this week
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 years ago
- ☆76Updated this week
- Tiberius is a deep learning gene finder.☆50Updated this week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆45Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Convert GFF, fastas, annotation table and species name into Genbank.☆14Updated 11 months ago
- ContScout sequence contamination filter tool☆20Updated last month