Identify short variants and structural variants from raw sequencing data or genomic sequences
☆36Mar 27, 2024Updated 2 years ago
Alternatives and similar repositories for VariantDetective
Users that are interested in VariantDetective are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jan 9, 2026Updated 4 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 2 months ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 5 years ago
- Fast viral consensus genome reconstruction☆27Feb 5, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 6 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆35Apr 26, 2026Updated 3 weeks ago
- ☆87Updated this week
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- fast phage annotation program☆210Apr 21, 2026Updated last month
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 8 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- ☆10Nov 24, 2025Updated 5 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆39Apr 20, 2026Updated last month
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 5 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆230Apr 27, 2026Updated 3 weeks ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated 3 weeks ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 2 months ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 11 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated last month
- Read, parse and operate different multiple input file formats with OpenVariant☆14Nov 28, 2025Updated 5 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 9 months ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 4 months ago
- ☆29Sep 28, 2021Updated 4 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Jul 12, 2022Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆40Feb 17, 2026Updated 3 months ago
- Bacterial GWAS analysis☆54May 13, 2026Updated last week
- Simple bacterial assembly and annotation pipeline☆86May 11, 2026Updated last week
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- ☆20Jan 23, 2019Updated 7 years ago