vibscc / DALILinks
R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
☆20Updated 9 months ago
Alternatives and similar repositories for DALI
Users that are interested in DALI are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- ☆41Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆65Updated 6 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆60Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- R package for semi-supervised single-cell data integration☆95Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- ☆45Updated last month
- scWGCNA☆61Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago