vibscc / DALI
R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
☆19Updated 2 years ago
Alternatives and similar repositories for DALI:
Users that are interested in DALI are comparing it to the libraries listed below
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- ☆40Updated 4 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆30Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- ☆59Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- scWGCNA☆58Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- SCDC☆45Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆30Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago