kmayerb / tcrdist3Links
flexible CDR based distance metrics
☆66Updated last year
Alternatives and similar repositories for tcrdist3
Users that are interested in tcrdist3 are comparing it to the libraries listed below
Sorting:
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated 3 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆58Updated 4 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆40Updated 5 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆68Updated 10 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆13Updated 5 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆38Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- ☆65Updated 2 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- ☆29Updated 2 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- ☆54Updated 10 months ago
- Inference of TCR motifs☆32Updated 2 months ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- R package to access DoRothEA's regulons☆150Updated last year