kmayerb / tcrdist3Links
flexible CDR based distance metrics
☆69Updated 3 weeks ago
Alternatives and similar repositories for tcrdist3
Users that are interested in tcrdist3 are comparing it to the libraries listed below
Sorting:
- ☆41Updated 5 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated last month
- Ultrafast TCR clustering algorithm based on geometric isometry☆71Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 4 months ago
- ☆31Updated 6 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- Using TCR and expression for sequence embedding☆62Updated last week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Updated 3 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Updated 4 months ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- ☆18Updated 3 years ago
- ⚙ ️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- ☆68Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 11 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 3 months ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- ☆49Updated 3 years ago
- ☆38Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- HLA-II ligand predictor.☆46Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated last month
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago