ZJUFanLab / scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆102Updated last year
Alternatives and similar repositories for scDeepSort:
Users that are interested in scDeepSort are comparing it to the libraries listed below
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆118Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆66Updated 2 months ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 8 months ago
- Deep Learning based cell composition analysis with Scaden.☆76Updated 4 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆96Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- ☆30Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆91Updated last week
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆76Updated this week
- Transformer for One-Stop Interpretable Cell-type Annotation☆138Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- SingleCellNet: classify single cells across species and platforms☆136Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- R package to access DoRothEA's regulons☆143Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆124Updated last month
- ☆116Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆118Updated last year
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- spatial transcriptome, single cell☆67Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- ☆115Updated 3 years ago
- ☆127Updated last year
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 3 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year