ZJUFanLab / scDeepSortLinks
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆106Updated 2 years ago
Alternatives and similar repositories for scDeepSort
Users that are interested in scDeepSort are comparing it to the libraries listed below
Sorting:
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆145Updated 2 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆94Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆119Updated 6 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆64Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 2 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆84Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 10 months ago
- ☆62Updated 3 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆128Updated 2 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆79Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- ☆31Updated 5 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆109Updated 2 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Spatial transcriptomics of heart tissue☆102Updated 2 years ago
- ☆50Updated 9 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- ☆127Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆44Updated last year
- scLearn:Learning for single cell assignment☆35Updated 11 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆154Updated 9 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 3 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 9 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆74Updated last year