Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆113Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for scDeepSort
Users that are interested in scDeepSort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆38Jul 1, 2024Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated 2 years ago
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 6 years ago
- ☆11Nov 29, 2022Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆139Mar 22, 2023Updated 3 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆96Jul 23, 2024Updated 2 years ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆217Jan 9, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A portable and fast single cell type identifier☆63May 12, 2021Updated 5 years ago
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Cell type prioritization in single-cell data☆153Mar 26, 2026Updated 7 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,720Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- Quantifying experimental perturbations at single cell resolution☆118Sep 27, 2024Updated 2 years ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- ☆12Dec 15, 2024Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 4 years ago
- ☆136Aug 23, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- R package for semi-supervised single-cell data integration☆104Aug 19, 2026Updated 2 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆343Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆683Oct 23, 2026Updated last week
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆91Jan 31, 2022Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago