Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆108Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for scDeepSort
Users that are interested in scDeepSort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆155Jul 25, 2024Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 3 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated last year
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 5 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- Single Cell Classification using RNA-seq data and Supervised Learning Algorithms☆13May 7, 2016Updated 10 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 3 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Cell type prioritization in single-cell data☆143Mar 26, 2026Updated 2 months ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆74Oct 16, 2025Updated 7 months ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆136Mar 22, 2023Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆78Jan 17, 2025Updated last year
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Dec 1, 2021Updated 4 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,635Jun 1, 2026Updated last week
- A tool for semi-automatic cell type classification☆485May 22, 2026Updated 2 weeks ago
- Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".☆11May 16, 2023Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Signac☆27Mar 6, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆17Sep 20, 2020Updated 5 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆340Updated this week
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆656Updated this week
- NicheNet: predict active ligand-target links between interacting cells☆655Jun 1, 2026Updated last week
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 11 months ago