ZJUFanLab / scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆101Updated last year
Alternatives and similar repositories for scDeepSort:
Users that are interested in scDeepSort are comparing it to the libraries listed below
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆116Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆89Updated 5 months ago
- ☆83Updated 2 weeks ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆74Updated 3 weeks ago
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- Deep Learning based cell composition analysis with Scaden.☆75Updated 2 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆57Updated 3 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆100Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆124Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆108Updated 4 months ago
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 5 years ago
- ☆30Updated 2 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆110Updated 4 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- ☆126Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆119Updated 8 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data☆73Updated 2 years ago
- ☆113Updated 2 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆95Updated 11 months ago
- spatial transcriptome, single cell☆66Updated last year
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆109Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆134Updated 10 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆69Updated last year
- scLearn:Learning for single cell assignment☆35Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆108Updated 11 months ago