ZJUFanLab / scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
☆100Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scDeepSort
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆61Updated this week
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆114Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆86Updated 3 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆72Updated 3 weeks ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆38Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆72Updated this week
- ☆107Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆56Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆54Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆131Updated 8 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆66Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆55Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆52Updated 2 years ago
- ☆78Updated last week
- ☆26Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆131Updated last year
- ☆107Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆83Updated last week
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 3 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆104Updated 2 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- spatial transcriptome, single cell☆64Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆104Updated 9 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆99Updated last year
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 5 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆96Updated 9 months ago