ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
☆13Jan 10, 2024Updated 2 years ago
Alternatives and similar repositories for ESICCC
Users that are interested in ESICCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 9 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆23Mar 21, 2021Updated 5 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆32Apr 9, 2022Updated 4 years ago
- ☆19Jun 15, 2023Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 8 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- ☆22Oct 23, 2023Updated 2 years ago
- Cell identification in high-resolution Spatial Transcriptomics☆15Dec 3, 2025Updated 8 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆79Jan 17, 2025Updated last year
- ☆143Jun 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Updated this week
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆18Sep 1, 2023Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 5 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago
- scDrug: From scRNA-seq to Drug Repositioning☆45May 8, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DeepRUOTv2 (Dynamical Optimal Transport Tools)☆23Dec 10, 2025Updated 8 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago
- ☆17Sep 13, 2024Updated last year
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 8 months ago
- ☆21Mar 2, 2026Updated 5 months ago
- ☆23Sep 20, 2022Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆18Feb 20, 2025Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆19Apr 17, 2025Updated last year
- ☆17Sep 16, 2024Updated last year
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago