Alternatives and similar repositories for STvEA:

Users that are interested in STvEA are comparing it to the libraries listed below

• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 4 months ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 3 years ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated 3 weeks ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆16Updated 5 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 weeks ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆48Updated 4 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated 3 weeks ago
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆19Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 3 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆52Updated 5 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 3 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆24Updated 4 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆29Updated 8 months ago
• jbergenstrahle / STUtility
  ☆47Updated 2 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• KlugerLab / DAseq
  ☆40Updated 3 years ago
• almaan / eggplant
  ☆21Updated 2 years ago
• lcmmichielsen / scHPL
  ☆35Updated 2 weeks ago
• wanglab-broad / CAST
  CAST package
  ☆32Updated 4 months ago