reedliu / scRNA-codesLinks
☆17Updated 6 years ago
Alternatives and similar repositories for scRNA-codes
Users that are interested in scRNA-codes are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ☆14Updated 6 years ago
- Network construction Algorithm☆22Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Dichotomous of innate immune landscape☆17Updated 6 years ago
- ☆16Updated 2 years ago
- ☆28Updated 4 years ago
- ☆13Updated 8 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Updated 2 years ago
- ☆17Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated last week
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Pseudotime Analysis for Bulk Data☆18Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- ☆18Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Updated 3 weeks ago
- ☆47Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆40Updated 5 months ago
- A pipeline for scRNA-seq data analysis☆15Updated 10 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago