Single-cell immune repertoire trajectory analysis in R
☆12Aug 8, 2025Updated 11 months ago
Alternatives and similar repositories for dandelionR
Users that are interested in dandelionR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 10 months ago
- Using BCR and expression for sequence embedding☆27Jun 12, 2026Updated last month
- ☆12May 11, 2024Updated 2 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- ☆15Jul 16, 2026Updated last week
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Jun 28, 2026Updated 3 weeks ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- ☆19Apr 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 months ago
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆16Jun 9, 2026Updated last month
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆47Mar 5, 2026Updated 4 months ago
- Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy☆15Sep 17, 2022Updated 3 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- ☆30Aug 21, 2024Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 7 months ago
- Code for paired TCR data analysis from TIRTL-seq experiments☆13Nov 24, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- A conda-smithy repository for ctng-compilers.☆15May 15, 2026Updated 2 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆30Jan 29, 2025Updated last year
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- Comprehensive pipeline for donor demultiplexing in single cell☆26Jun 30, 2026Updated 3 weeks ago
- ☆10May 31, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for analysing single cell data☆65Dec 8, 2022Updated 3 years ago
- ☆85Dec 11, 2023Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 6 months ago
- Pipeline for harmonising immunological receptor–epitope interactions☆15Jul 13, 2026Updated last week
- Home of the bread package, a fread wrapper simplifying the use of unix commands in order to deal with big files with low memory☆14Jun 26, 2023Updated 3 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆14Mar 12, 2026Updated 4 months ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year