heiniglab / scPower
Experimental design framework for scRNAseq population studies (eQTL and DE)
☆45Updated last week
Alternatives and similar repositories for scPower:
Users that are interested in scPower are comparing it to the libraries listed below
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 8 months ago
- ☆39Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆29Updated last year
- ☆34Updated 8 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆48Updated 2 years ago
- Clone identification from single-cell data☆60Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 2 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆35Updated 10 months ago
- ☆29Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- ☆38Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆20Updated 2 months ago
- scWGCNA☆56Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 9 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- ☆31Updated 8 months ago