heiniglab / scPower
Experimental design framework for scRNAseq population studies (eQTL and DE)
☆45Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scPower
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- ☆39Updated 3 years ago
- ☆34Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- ☆29Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆47Updated 2 years ago
- scWGCNA☆55Updated 2 years ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Single-cell Case Control Analysis☆47Updated 2 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- AnnData interoperability in R☆58Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- ☆37Updated 3 years ago
- SCDC☆42Updated last year
- ☆29Updated 8 months ago
- ☆27Updated 3 months ago
- ☆47Updated 3 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago