10XGenomics / enclone

Related projects ⓘ

Alternatives and complementary repositories for enclone

• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆46Updated 2 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• cellatlas / human
  ☆40Updated 3 weeks ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆23Updated 5 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 2 months ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆27Updated 4 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆38Updated 3 weeks ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆26Updated 2 years ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆31Updated 6 months ago
• ncborcherding / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated 3 weeks ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆25Updated 3 weeks ago
• COMBINE-lab / simpleaf
  A rust framework to make using alevin-fry even simpler
  ☆46Updated last month
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆24Updated 3 years ago
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated 2 months ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated last year
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last month
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆42Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 11 months ago
• lcmmichielsen / scHPL
  ☆34Updated 6 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆24Updated 2 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆55Updated 9 months ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 3 years ago
• andrewrech / antigen.garnish
  ☆46Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated last year
• satijalab / azimuth-references
  ☆19Updated 2 weeks ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆63Updated 6 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year