VDJ Clonotyping & Analysis Tools
☆50Mar 7, 2025Updated last year
Alternatives and similar repositories for enclone
Users that are interested in enclone are comparing it to the libraries listed below
Sorting:
- Rust utility code☆32Feb 9, 2024Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last week
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- A toolkit for single-cell immune profiling☆366Mar 9, 2026Updated last week
- Count HLA alleles in single-cell RNA-seq data☆63Nov 5, 2021Updated 4 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆26Jul 14, 2025Updated 8 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- ☆14Oct 16, 2025Updated 5 months ago
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated last year
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated last month
- A library of common biomedical types.☆40Apr 14, 2025Updated 11 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 2 years ago
- A Rust library for calculating the SASA for a protein. 5x faster than Freesasa. Based on the Shrake & Rupley algorithm.☆20Updated this week
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Oct 18, 2022Updated 3 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated 3 weeks ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated 9 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 4 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆313Dec 19, 2025Updated 3 months ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 6 months ago
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 8 months ago
- De Bruijn graphs in Rust☆71Jul 22, 2024Updated last year
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆135Nov 28, 2023Updated 2 years ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Target prediction☆13May 8, 2020Updated 5 years ago
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago